Kawakami Lab

2016​

 

• Tetrault H, Levy C, Kawakami T, Ungerer MC (2016) Physiological and phenological determinants of temperature adaptation in the perennial sunflower Helianthus maximiliani. American Midland Naturalist, 175, 91-102

• Rönnegård L, McFarlane SE, Husby A, Kawakami T, Ellegren H, Qvarnström A: Increasing the power of genome wide association studies in natural populations using repeated measures – evaluation and implementation. Methods in Ecology and Evolution, in press (DOI: 10.1111/2041-210X.12535)

 

 

2015

 

• Burri R, Nater A, Kawakami T, Mugal CF, Olason PI, Smeds L, Suh A, Dutoit L, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H (2015) Evolution of genome differentiation across the speciation continuum in Ficedula flycatchers. Genome Biology, 25, 1656-1665.

• Nater A, Burri R, Kawakami T, Smeds L, Ellegren H (2015) Resolving evolutionary relationships in closely related species with whole-genome sequencing data. Systematic Biology, 64, 1000-1017.

• Husby A, Kawakami T, Rönnegård, L, Smeds L, Ellegren H, Qvarnström A (2015) Genome Wide Association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life history trait. Proceedings of The Royal Society B, 282, 20150156.

 

 

2014

 

• Smeds L, Kawakami T, Burri R, Balbas PB, Husby A, Qvarnström A, Uebbing S, Ellegren H (2014) Genomic identification and characterization of an avian pseudoautosomal region. Nature Communications, 5, 5448.

• Kawakami T, Smeds L, Backström N, Husby A, Qvarnström A, Mugal CF, Olason PI, Ellegren H (2014) A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Molecular Ecology, 23, 4035-4058.

• Kawakami T, Olason PI, Backström N, Husby A, Burri R, Qvarnström A, Ellegren H (2014) Linkage disequilibrium and ongoing gene flow between Ficedula flycatchers revealed by the development of a 50k SNP array. Molecular Ecology Resources, 14, 1248-1260.

• Kawakami T, Darby B, Ungerer MC (2014) Transcriptome characterization and development of genome wide molecular markers in perennial sunflower species, Helianthus maximiliani. Molecular Ecology Resources, 14, 812-819.

 

 

2013

 

• Nadachowska-Brzyska K, Burri R, Olason PI, Kawakami T, Smeds L, Ellegren H (2013) Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data. PLoS Genetics, 19, e1003942

• Ungerer MC, Kawakami T (2013)  Transcriptional dynamics of LTR retrotransposons in early generation and ancient sunflower hybrids. Genome Biology and Evolution, 5, 329-337

 

 

2012

 

• Ellegren H, Smeds L, Burri R, Olason PI, Backström N, Kawakami T, Künstner A, Mäkinen H, Nadachowska-Brzyska K, Qvarnström A, Uebbing S, Wolf JBW (2012) The genomic architecture of species divergence in Ficedula flycatchers. Nature, 491, 756-760

• Jackson B, Kawakami T, Cooper SJB, Galindo J, Butlin RK (2012) A genome scan and linkage disequilibrium analysis among chromosomal races of the Australian grasshopper Vandiemenella viatica. PLoS One, 7, e47549

• Kawakami T, Butlin RK (2012) Hybrid Zones. Encyclopedia of Life Sciences, DOI: 10.1002/9780470015902.a0001752.pub2

 

 

2011

 

• Kawakami T, Morgan TJ, Nippert, JB, Dhakal P, Keith R, Ungerer MC (2011) Natural selection drives clinal life history patterns in the perennial sunflower species, Helianthus maximiliani. Molecular Ecology, 20, 2318-2328.

• Kawakami T, Butlin RK, Cooper SJB (2011) Stasipatric speciation revisited: modes of diversification in Australian morabine grasshoppers (Vandiemenella, viatica species group). Insects, 2, 49-61.

• Kawakami T, Dhakal P, Katterhenry AN, Heatherington C., Ungerer MC (2011) Transposable element proliferation is rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons. Genome Biology and Evolution, 3, 156-167.

• Guzik MT, Cooper SJB, Humphreys WF, Ong S, Kawakami T, Austin AD (2011) Evidence for micro-allopatric speciation processes in an isolated desert aquifer. Heredity, 107, 215-230.

 

 

2010

 

• Kawakami T, Dhakal P, Keith R, Kane NC, Ungerer MC (2010) Development and characterization of 13 polymorphic EST-SSR loci for the perennial sunflower species, Helianthus maximiliani. Molecular Ecology Resources, 10, 751-754.

• Kawakami T, Strakosh SC, Zhen Y, Ungerer MC (2010) Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species. Heredity, 104, 341-350.

 

 

2009

 

• Kawakami T, Butlin RK, Adams M, Paull DJ, Cooper SJB (2009) Re-examination of a proposed case of stasipatric speciation: phylogeography of the Australian morabine grasshoppers (Vandiemenella viatica species group). Molecular Ecology, 18, 3429-3442.

• Kawakami T, Butlin RK, Adams M, Paull DJ, Cooper SJB (2009) Genetic analysis of a chromosomal hybrid zone in the Australian morabine grasshoppers (Vandiemenella, viatica species group). Evolution, 63, 139-152.

 

2007

 

• Kawakami T, Butlin RK, Adams M, Saint KM, Paull DJ, Cooper SJB (2007) Differential gene flow of mitochondrial and nuclear DNA markers among chromosomal races of Australian morabine grasshoppers (Vandiemenella, viatica species group). Molecular Ecology, 16, 5044-5056.

• Kawakami T, Butlin RK, Paull DJ, Cooper SJB (2007) Polymorphic microsatellite markers for chromosomal races of Australian morabine grasshoppers (Vandiemenella, viatica species group). Molecular Ecology Notes, 7, 1181-1184.